Komodo Dragons Have a Famous Endurance. Scientists Are Looking for Its Roots in Their Genes.

Genetic adaptations involving the function of the mitochondria may have resulted in the amplification of the lizard’s aerobic capacity.

Washington: Scientists have mapped the genome of the Komodo dragon, the world’s largest lizard, discovering intriguing secrets behind the impressive speed and endurance these cold-blooded predators muster by ratcheting up their metabolism to mammal-like levels.

Researchers said on Monday they pinpointed crucial genetic adaptations that may underpin the tenaciousness of these lizards that inhabit several Indonesian islands including Komodo and bring down prey as big as a water buffalo with a venomous bite.

Komodo dragons reach up to about 10 feet (three metres) long, possess curved and serrated teeth, a yellow forked tongue, strong limbs and a long tail.

“This is an apex predator living on isolated islands, and it’s absolutely gigantic. It’s just an awesome animal,” said Benoit Bruneau, director of the Gladstone Institute of Cardiovascular Disease, affiliated with the University of California, San Francisco, one of the senior authors of the study published in the journal Nature Ecology & Evolution.

Also read: We Don’t Really Know What ‘Species’ Are. Here’s Why.

“Reptiles are kind of like a playground for evolution. There is so much diversity in size and form and behaviour and their physiology,” Bruneau added.

The team sequenced the genome using blood samples of two Komodo dragons housed at Zoo Atlanta, named Slasher and Rinca.

A 6.6 feet Komodo dragon at the national zoo in Pretoria. Photo: Reuters/Salim Henry/Files

The researchers discovered genetic adaptations involving the function of the mitochondria, the power generators of cells that are critical in governing the function of cardiac and other muscles, that may amplify the lizard’s aerobic capacity.

As cold-blooded creatures, reptiles typically lack in aerobic capacity, rapidly becoming exhausted after physical exertions, unlike warm-blooded mammals. Komodo dragons, an exception among reptiles, can achieve near-mammalian metabolism.

The researchers also found adaptations involving genes that control chemical sensors involved in an advanced sensory system that lets Komodo dragons detect hormones, the body’s chemical messengers, and pheromones, chemicals released particularly by mammals that serve as cues to other members of their species.

These adaptations may help Komodo dragons find prey over long distances, added study co-author Katherine Pollard, director of the Gladstone Institute of Data Science & Biotechnology.

One component of the Komodo dragon’s venom is an anti-coagulant compound that prevents the victim’s blood from clotting, causing it to bleed to death. The researchers found adaptations in Komodo dragon genes involved in coagulation that make these lizards immune from the venom anti-coagulant, protecting them from bleeding to death when attacked by another of their own species.

“When two males are fighting one another,” Bruneau said, “it is one impressive show of force.”

Scientists Discover How Serotonin Helps Brain Cells Cope With Stress

A study provides new evidence that serotonin can directly influence the power-plants of brain cells.

New Delhi: Serotonin is a chemical substance that relays information from one part of the brain to another, and is known to play a key role in a number of functions ranging from sleep to social behaviour.

Now, Indian scientists have helped discover that serotonin boosts energy production in brain cells and helps them survive better under stress. This new knowledge can potentially be used to develop anti-stress drugs in the future.

The study, by scientists at the Tata Institute of Fundamental Research (TIFR), Mumbai, found that the neurotransmitter boosts the number of mitochondria in brain cells. Mitochondria generate energy in brain cells and help them execute cellular functions, including deal with stress.

In addition, serotonin also increases the amount of energy that mitochondria produce.

L-R: Vidita Vaidya, Ashok Vaidya (her father), Sashaina Fanibunda and Ullas Kolthur-Seetharam. Source: India Science Wire

L-R: Vidita Vaidya, Ashok Vaidya (her father), Sashaina Fanibunda and Ullas Kolthur-Seetharam. Source: India Science Wire

According to the study’s authors, that serotonin could regulate neuronal energetics wasn’t known before. Two groups of researchers, each led by Vidita Vaidya and Ullas Kolthur-Seetharam, performed the experiments. Their findings were published in the journal Proceedings of the National Academy of Sciences on May 8.

They also unraveled the mechanism through which serotonin boosts energy levels: when serotonin helps produce new mitochondria in neurons, the process is accompanied by increased cellular respiration as well as quantities of adenosine triphosphate, better known as ATP.

These effects of serotonin involve the serotonin2A receptor and SIRT1 and PGC-1a, the master regulators of mitochondrial generation.

“Our study has uncovered an unprecedented role of serotonin in energy production in neurons, directly impacting how neurons handle stress,” the researchers noted. “The study has also identified novel therapeutic targets for the treatment of neurodegenerative and psychiatric disorders.”

Further, it provides new evidence that serotonin can directly influence neuronal power-plants and thus influence the way neurons deal with stress. Thus far, this aspect has only been studied in laboratory animals.

The research team included scientists from TIFR, the University of Buenos Aires, Argentina; Columbia University, New York; and from the Kasturba Health Society, Mumbai.

Dinesh C. Sharma writes at India Science Wire and tweets @dineshcsharma.

Taweez-Dhaaga, or Jinn in the System

The jinn ‘possess’ humans at a cellular level, just as immigrants ‘invade’ the nation on a societal level.

“And the unbelievers would almost trip thee up with their eyes when they hear the Message; and they say: surely he is possessed.
But it is nothing less than a Message to all the worlds.”
~Quran, Surah al-Qalam, 51- 52

 

Ali Jinni can only live
in broken temples, on public roads, float
in the city’s blue smog. The word of God
draws lines on the ground sharp enough
to cut Jinni’s feet, lines at home, at school,
lines in big letters at the mosque,
lines worming between immigration desks,
lines on papers stamped in red,
lines that Jinni stands behind,
possessing only his Message.

§

 

Cell bodies – how do we visualisation the ‘invasion’ of the nation by migrants? Credit: Mustafa Khanbhai

This poem is related to a series titled ‘Jinn in the System’. This project is based on a ‘biological’ imagination of jinn possession, as an allegory for anti-immigrant propaganda. Jinn (or djinn) are supernatural spirits in Islamic folklore. They were either welcomed or warded off, because of their association with terminal/mental illness and magic.

These images are inspired by medieval illuminated manuscripts and animal cell diagrams. As the jinn are shown to ‘possess’ the human at a cellular level, much as immigrants are seen to ‘invade’ the nation at the level of the citizenry.

Mustafa Khanbhai is a 25-year-old artist based in New Delhi. Find him on Instagram @musta_fakay

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Taweez-Dhaaga, or Jinn in the System

The jinn ‘possess’ humans at a cellular level, just as immigrants ‘invade’ the nation on a societal level.

“And the unbelievers would almost trip thee up with their eyes when they hear the Message; and they say: surely he is possessed.
But it is nothing less than a Message to all the worlds.”
~Quran, Surah al-Qalam, 51- 52

 

Ali Jinni can only live
in broken temples, on public roads, float
in the city’s blue smog. The word of God
draws lines on the ground sharp enough
to cut Jinni’s feet, lines at home, at school,
lines in big letters at the mosque,
lines worming between immigration desks,
lines on papers stamped in red,
lines that Jinni stands behind,
possessing only his Message.

§

 

Cell bodies – how do we visualisation the ‘invasion’ of the nation by migrants? Credit: Mustafa Khanbhai

This poem is related to a series titled ‘Jinn in the System’. This project is based on a ‘biological’ imagination of jinn possession, as an allegory for anti-immigrant propaganda. Jinn (or djinn) are supernatural spirits in Islamic folklore. They were either welcomed or warded off, because of their association with terminal/mental illness and magic.

These images are inspired by medieval illuminated manuscripts and animal cell diagrams. As the jinn are shown to ‘possess’ the human at a cellular level, much as immigrants are seen to ‘invade’ the nation at the level of the citizenry.

Mustafa Khanbhai is a 25-year-old artist based in New Delhi. Find him on Instagram @musta_fakay

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We deal solely with the top five major brands recognized Liverpool Home Football Shirt 2018/2019 for his or her dedication to grassroots football – adidas, Nike, Mitre, Prostar and Stanno – supplying branded football kits, tracksuits, rain jackets, footballs and equipment. All faux football shirts are Juventus Home Football Shirt 2018/2019 very cheap but the unique ones in sports activities retailers are very expensive. Buy official Lionel Messi football shirts for adults, youngsters and infants.
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Making Cellular Art With a Cell Biologist

Richa Rikhy uses advanced techniques, such as animal culture of mutant flies and genetic engineering, to do marvellous things on the microscope.

Richa Rikhy uses advanced techniques, such as animal culture of mutant flies and genetic engineering, to do marvellous things on the microscope.

Richa Rikhy, a cell biologist at IISER, Pune. Credit: Aashima Dogra/Flickr, CC BY 2.0

Richa Rikhy. Credit: Aashima Dogra/Flickr, CC BY 2.0

Osmosis Jones is a great movie. It is a world where cells are loveable characters that drive protein cars and arteries are the superhighways. Richa Rikhy lives in that world. In fact, as a cell biologist, she goes even deeper into reality under the coverslip of her confocal microscopes.

She makes beautiful films of embryos, starting from a single cell to a big oval ball of many cells. With her research students, she solves yet unsolved mysteries about the architecture of the embryo and, on the way, identifies molecules and processes that played a part in making all of us, one plasma membrane at a time.

“We like to do this by looking at the cells. That it is our specialisation,” she told me at her roomy office at the modern Indian Institute of Science Education and Research (IISER) campus in Pune.

First, Rikhy genetically inserts a fluorescent label into a cell component of the very first embryo cell. “Let’s say we label a molecule that resides in the plasma membrane or the cover of the cell. We can now take this embryo to the microscope. At various resolution (optical ranges that the microscope can capture), we try to describe how the plasma membranes of the cells and the embryo itself start becoming complex.”

She doesn’t use human embryos for this. She performs all her experiments on fruit fly embryos maintained at IISER’s fly lab, that she helped set up, thanks to her training at the Tata Institute of Fundamental Research, Mumbai, during her PhD there.

“It is not so easy to get clearance to work with human embryos.” Additionally, the kind of questions Rikhy’s lab is asking are relevant to any embryo. The early organisation of cells has remained somewhat unchanged during evolution. “Organisms with a short lifespan make good models as we can study these processes much quicker.”

Taking inspiration from art

Rikhy uses techniques that are considered advanced, such as animal culture of mutant flies and genetic engineering, to do very simple and marvellous things on the microscope.

“Microscopy attracted me very early on. It just fits right in with my interests in drawing and painting and architecture. Sometimes I feel my science is the way it is because I like art so much.”

She observes and records embryos developing in four dimensions: length, breadth, width and time. “In two hours, the outer layer of the fruit fly embryo goes from one cell to 6,000 cells just around its outer cover. The cells go from being one round cell to a rectangular sheet of cells. Then the cells become polygonal in a very specific way to maintain the roundness of the whole embryo. Some specific molecules help them in doing that.”

“What I find beautiful is that they get all the information they need to develop into the whole organism either from the mother or they just have it intrinsically.”

Like a true artist, Rikhy reflects on the existential void. “Most research is driven by how something happens. And then we try to ‘explain’ the why of the how. Why is a very difficult question in biology, isn’t it? – like why are we here?,” she laughs.

“Suddenly, from a very simple plasma membrane, we get at least three different layers. One that is communicating with the environment; another that is actually holding adjacent cells so there is no leakage. And the third, which is just stuck at the bottom. This gives a very nice barrier. And then a lot of movements of the cell community take place to give rise to different layers of cells”

The films that Rikhy’s lab makes essentially highlight these structures as well as the interactions between them. They then go on to probe how these complex features are important for that particular stage of development.

“One could then manipulate genes to try and see what mechanisms are involved in embryonic  development. If I disturb this organisation of the plasma membrane, does the embryo become floppy and unable to maintain its shape and therefore the activities inside?”

The prime focus of Rikhy’s work is on the architecture of the cell – both inside and outside. She draws a parallel with the room we’re sitting in. “What are the basic principles giving some function to this room? In this way, we are asking – what makes the cell, what are the features of the cell, and how does this one cell of a particular shape and size give rise to different other cells with different jobs.”

The visual nature of her observations inspires her to do make more than just these films – something very in-tune with movies like Osmosis Jones. “It will be nice to do a comic on this. I really like teaching with the help of movies and thinking of biological processes with comics and so on.”

“Art is a motivation for my approach in biology. If I was not doing science, I would love to be in the field of making animations. I enjoy making schematics of these processes in software. They are still schematics, and cartoons I think are at the next level of really making this intelligible for everyone.”

Her two muses: plasma membrane and mitochondria

Embryonic cells first divide to form a tightly packed single sheet of cells arranged like an empty sphere. The sheet then bends so that some of the newly formed cells (the precursors of muscles come first) can go inside the ball. While all of this is happening, the whole structure of the embryo needs to be architecturally stable or it will collapse.

An embryo in its initial stages is much like a football, a very precise analogy according to Rikhy. From the outside, like a football, the embryo has many edges, made up of plasma membranes of predominantly hexagonal (six-sided) cells. Other cells may have plasma membrane of four sides, five sides or even seven sides.

In a paper yet to be published, Rikhy provides evidence for the specific progression of numbers of sides as the embryo develops. “In the embryo, there is a balance of cells with 4-5-6-7 sided plasma membranes and for the first time we have characterised how this distribution of the number of sides increases as the cells multiply.”

“If we keep increasing the rooms in the same house they will have common walls, more neighbours. The same is the case with an embryo: when the numbers of cells increase, the numbers of edges or walls increase in number. It turns out that the optimal number is predominantly centred around six walls or edges. Also, six walls is a great way to pack objects since the surface area to volume ratio gets minimised efficiently and this is energy-minimised architecture.”

Rikhy’s research also shines a light, literally, on the powerhouses of the cell: the mitochondria. Scientific interest in these generators of energy, which we inherit only from our mothers, has renewed globally in the last two decades. And Rikhy is part of the bandwagon.

“We have developed methods to visualise mitochondria in the living embryo. We can shine a light in a very focused region and only mitochondria in that region will turn on, like a switch, and show up under the light.”

This method is called photoactivation.

Rikhy also created mitochondrial mutants, which do not divide like normal ones do. So what we get looks like many mitochondria fused together with a long shape. Mitochondrial shape mutants give rise to cells that do not differentiate into a particular kind of cell; they keep proliferating. In a sense, it emulates a cancer model.

But Rikhy is in no hurry to work with disease models. “I’m still very very interested in the basic biology of the process, which we know so little of. Maybe I’ll do something else later on, but right now this is fun,” she said with the rebellious integrity of officer Ozzy from Osmosis Jones.

And she doesn’t worry about evil mutant flies.“Most mutants do not survive in the wild and I don’t think they will take over our earth. They will just die unless they were grown with utmost care in the lab.”

There aren’t enough women in any field

I ask my standard question: “Why do you think there are not enough women in science in India?” Rikhy replies: “Are there enough women in any field? I think there’s a bigger issue here. It is not women in science, it is women in professional jobs of any kind.”

While growing up in Mumbai, she was raised no different than her brother. This will be the case for most girls growing up in modern India today, she agrees. But Rikhy believes the intrinsic problem is a societal one. “Women seem to have to deal with much more to get to the same position. There is a barrier that they have to cross. I would say that I have experienced a lot but I’m aware of it.”

“It gives a certain character to a meeting which would not exist if there was a balance between males and females. Sometimes it happens that the rest take women a little more casually. The seriousness with which a male boss can deliver arguments or even say that you’ve got to do this seems to be way more effective than a woman doing it.”

Including women in boardrooms and committees can be a big asset, according to Rikhy. One example she cites is Sitara Shipping, a company run by her friend Sanjam Saha, which employed only women for a while.

“They stuck with keeping it an all women company for a long time because they wanted to cultivate the parallel processing skills women seem to have – their ability to do many things at the same time.”

Wife-husband scientist teams

Generally, there is a point in a woman’s life when she is forced to choose: taking her professional options forward or devoting all her time to the family. This choice is thrust upon only women, it seems. “If the husband doesn’t cooperate then it is not going to work out. They will be left a little behind,” Rikhy said.

But institutions like IISER are waking up to this problem. While many Indian institutes, including all CSIR institutes, have sexist recruitment policies, including disallowing employees to be married to each other. However, IISERs and IITs are now actively recruiting couples.

When Rikhy and her husband returned to India after doing their postdocs in the US National Institutes of Health, they were looking for a research institute that would accept them both. At the right place and at the right time, Rikhy and her husband are now one of the five wife-husband faculty at IISER Pune.

“My husband is in the same department. And that really helps. It’s a fantastic thing. And I think the hiring couples together is one of the things that really makes a difference. Even helping the spouse be in the same city, so that they can be in the same place and go forward in another profession, really helps.”

Of course sharing the passion for science helps, too. “A lot of the scientists are married to other scientists. I think that is partly because of the mental match. But also there are things that are going to be difficult on the professional path of a scientist and if the spouse understands, then things just go smoothly.”

This piece was originally published by The Life of Science. The Wire is happy to support this project by Aashima Dogra and Nandita Jayaraj, who are traveling across India to meet some fantastic women scientists.

After Its Height, the Giraffe is Also Unique in How it Compensates for it

Biologists have long debated whether giraffes extended their necks first and then evolved the heart adaptations to counter the difficulties posed by the long necks.

Biologists have long debated whether giraffes extended their necks first and then evolved the heart adaptations to counter the difficulties posed by the long necks.

Adult male Masai giraffe in Ndarakwai, West Kilimanjaro, Tanzania. Credit: Doug Cavener

Adult male Masai giraffe in Ndarakwai, West Kilimanjaro, Tanzania. Credit: Doug Cavener

Animals do the most amazing things. Read about them in this series by Janaki Lenin.

Being the world’s tallest animal comes at a price. The giraffe’s towering height and large leopard-like spots make it an iconic animal of the African savanna. Even as other ruminants crane their necks to reach the lower branches of trees, this lanky animal takes advantage of its height to browse on tree crowns.

How does its heart pump blood up to its brain? Blood has to fight gravity to course up the two-metre-long neck to reach the brain. For years, researchers puzzled over how the giraffe achieved this. A 1987 study discovered its muscular heart pumps blood with such force that the animal’s blood pressure is two and half times greater than ours. While this works as long as the giraffe stands upright, fulfilling an everyday need – drinking water – can turn into a life-threatening situation.

To reach water, the giraffe splays its front legs and lowers its head. Hypertension could send blood surging into the brain and the animal could collapse from a stroke. If it survived this and slaked its thirst, it faces another danger. Lifting its head would cause pressure to drop and the giraffe to faint. It has a neat work-around: The jugular vein locks off blood to the head when the animal bends down. And on lifting the head, the vein opens up again.

As anyone suffering from high blood pressure knows, it causes the legs to swell with fluid, a condition called edema. Yet, giraffes have long spindly legs. Their bodies have a couple of tricks to solve this problem. The arteries below the knees have thick walls to bear the pressure, and their hide wraps tightly around their bodies, giving no space for any fluid to collect.

The main cause of disease and failure of kidneys in humans is hypertension. But giraffe kidneys show no signs of damage. The renal capsule, a tough layer of fibrous tissue that envelopes the kidneys, is strong enough to withstand the high blood pressure. The curious thing is: giraffes aren’t born with hypertension. They develop it as they grow and their necks begin extending.

Besides challenging the cardiovascular and renal systems, the long neck also taxes the skeleton and muscles. Nineteen bones support the long necks of flamingos. But the giraffe has the same number of vertebral bones as we have: seven. What it lacks in quantity, it makes up in size. Each vertebra of an adult giraffe is almost a foot long. And yet, the neck is flexible enough that it twists its long neck around and rests it on its rump when asleep.

The nuchal ligament is a band of elastic tissue running down the length of the neck. In giraffes, it is much larger and tougher, the better to hold up the weight of the head and neck. All these adaptations are common to all the nine subspecies of giraffes, even though they separated from each other two million years ago.

Okapi. Credit: Raul654/A-Z Animals, CC BY-SA 3.0

Okapi. Credit: Raul654/A-Z Animals, CC BY-SA 3.0

What are the genetic underpinnings of these adaptations? How different is the genome of this unique creature compared to other ruminants? A group of molecular biologists led by Douglas R. Cavener from Penn State University, US and Morris Agaba from the Nelson Mandela African Institute of Science and Technology, Tanzania, investigated. The 16-member team sequenced the genes of two Masai giraffes from Masai Mara, Kenya, and an okapi foetus from the White Oak Conservation Center, US. The researchers scoured through the genomes looking for genetic clues.

The okapi is the giraffe’s closest and only surviving relative but there’s little family resemblance. It has none of the giraffe’s looks – no long neck or leopard spots. The reddish brown animal resembles an antelope with the striped legs of a zebra. Biologists think their common ancestor may have had a neck that was longer than an okapi’s but shorter than a giraffe’s.

Cattle ancestors separated from giraffe ancestors 28 million years ago. So the researchers compared giraffe and okapi genes with cattle genes to identify areas of difference. Then by matching the genes of the okapi and the giraffe, the researchers narrowed down the genes specific to giraffes. They estimate  the giraffe grew tall and evolved a “turbocharged” heart within the last 11.5 million years, when its lineage split from the okapi’s.

The researchers made a surprise discovery: Of the thousands of genes, no more than 70 genes with multiple adaptations make the giraffe the unique animal it is. Several of these regulate skeletal, cardiovascular, and neural development while others affect metabolism and growth. Four genes may govern the development of the spine and legs, while eight are likely to administer heart functions. The researchers also identified the genes that allow giraffes to digest the nutritious but toxic leaves of the acacia. The genes that control this metabolism also appear to affect the heart.

Biologists have long debated whether giraffes extended their necks first and then evolved the heart adaptations to counter the difficulties posed by the long necks. Since many genes affect more than one function, the researchers suggest the changes didn’t occur independent of each other but in tandem. For instance, one particular gene, FGFRL1, regulates the growth of the skeleton and the cardiovascular system.

A young Masai giraffe in Ngorongoro Conservation Area, Tanzania. Credit: Doug Cavener

A young Masai giraffe in Ngorongoro Conservation Area, Tanzania. Credit: Doug Cavener

The real surprise was the many disparate functions performed by a gene. “That genes involved in mitochondrial function might be connected even remotely to the physiology was quite astounding,” says lead author Morris Agaba. “Mitochondria is supposed to do one thing: produce energy for the cells. Why would  mitochondrial genes be involved? Hidden in the complex names and symbols that scientists give to genes and proteins are two genes, FOLR1 and MTHFD1. These two genes are involved in the  metabolism of Vitamin B9 that’s mainly found in leafy shrubs. Why would these genes standout in the giraffe and okapi?”

Mutation in FOLR1 is lethal to mice embryos. In humans, it causes defects to develop in myelin, the white sheath protecting the spinal cord, brain, and other nerves, a condition called hypomyelination. Myelin plays a major role in transmission of nerve impulses.  In giraffes, the mutations in this gene appear to act in concert with other genes to drive the growth of their unique adaptations.

Mutations in another gene, MDC1, kill defective cells and protect giraffes and okapis from cancer. This gene “exhibits the most radical evolutionary change in giraffe and okapi compared with all other vertebrates,” write the researchers.

“Clearly the unique physiognomy and physiology must have at least some of its background in gene variability, so in this respect it is probably difficult to say that the results are extremely surprising,” says Christian Aalkjær of Aarhus University, Denmark. He wasn’t involved in this study.

While picking through the genes and finding amino acids indicate how giraffes get their long necks, further studies have to confirm their functions. “I would love to see the core long neck gene set refined,” says Agaba, “and if possible transplant the evolution process, so to speak, into a candidate model antelope as proof. We have opened a can of genes, and I believe that something good and useful will come out that may advance our knowledge of nature, our health and that of our ecosystems on a fragile earth.”

The team writes studying the giraffe’s adaptations would provide insights for the treatment of cardiovascular disease and hypertension in humans. The study was published in the journal Nature Communications on May 18, 2016.

 

Janaki Lenin is the author of My Husband and Other Animals. She lives in a forest with snake-man Rom Whitaker and tweets at @janakilenin.